4UPY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4UPY_001 | 1/A/13:22 | tRNA D-loop | geometric HL_3TUP_001 HL_45175.1 | |
| HL_4UPY_002 | 1/A/31:39 | tRNA anticodon loop | geometric HL_9DFC_104 NA | |
| HL_4UPY_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases | geometric HL_6UGG_006 HL_33597.6 | |
| HL_4UPY_004 | 1/C/79:87 | No text annotation | ||
| HL_4UPY_005 | 1/C/161:166 | No text annotation | ||
| HL_4UPY_007 | 1/C/231:236 | No text annotation | ||
| HL_4UPY_008 | 1/C/263:270 | No text annotation | ||
| HL_4UPY_011 | 1/C/294:299 | No text annotation | geometric HL_5FMZ_001 HL_21043.1 | |
| HL_4UPY_010 | 1/C/304:313 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UPY_001 | 1/C/47:49, 1/C/114:115 | No text annotation | ||
| IL_4UPY_002 | 1/C/52:58, 1/C/110:111 | No text annotation | ||
| IL_4UPY_013 | 1/C/61:66, 1/C/101:107 | No text annotation | ||
| IL_4UPY_005 | 1/C/67:69, 1/C/98:100 | Isolated cWH basepair | geometric IL_8CRE_432 IL_10892.4 | |
| IL_4UPY_006 | 1/C/70:75, 1/C/91:97 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_007 IL_02666.3 | |
| IL_4UPY_007 | 1/C/135:137, 1/C/287:289 | No text annotation | ||
| IL_4UPY_010 | 1/C/149:150, 1/C/242:244 | No text annotation | ||
| IL_4UPY_012 | 1/C/255:261, 1/C/272:277 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UPY_002 | 1/C/140:141, 1/C/252:253, 1/C/279:284 | No text annotation | ||
| J4_4UPY_001 | 1/A/4:10, 1/A/25:27, 1/A/43:49, 1/A/65:69 | No text annotation | ||
| J4_4UPY_002 | 1/C/133:134, 1/C/290:291, 1/C/302:303, 1/C/314:315 | No text annotation | ||
| J4_4UPY_003 | 1/C/153:156, 1/C/171:172, 1/C/227:229, 1/C/238:239 | No text annotation |
Problematic loops
No problematic loops
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